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I’ve deployed the first public version of TrackScribe on this website. This is a run, cycle or walk route planner that sources elevation data from the NZTopo database.

Continue reading TrackScribe: A run/cycle/walk route planner for New Zealand

I’ve published my CopyPMID Chrome extension in the Chrome web store. It’s one of the most boring extensions in the world, as all it does is add a button to PubMed pages to allow quick copying of the PubMed ID to the clipboard, but I needed to publish it on the web store so I could use it myself! I use it quickly import PubMed references into JabRef by PMID. The source code is also available on my GitHub page.

I’ve added a link to my GitHub page to the sidebar. At the moment, the only project available there is ProfScore, the profile-based conservation score for biopython published in the Proteins: Structure, Function and Bioinformatics (doi: 10.1002/prot.24711).

The first fully-functional version of TraceROI is now available (0.3.2). This is an ImageJ plugin for semi-automated tracing of neuronal processes based on the NeuronJ algorithm but produces polyline ROIs and integrates with the ImageJ ROI Manager. It can be used for semi-automated measuring and straightening of neurites in two-dimensional images of neurons.

Welcome to twlee.nz! There currently isn’t much on this site except a few ImageJ plugins that I have created.